Tuesday 26 March 2019

March

March already.  Where is the first year going at university?

My good intentions were to add to this blog each week.  Recording my life lessons as well as my science lessons.  Likely the biggest lesson I learnt was that life gets in the way, even with the best intentions.

When you first begin to fill out that UCAS form, the type of questions you ask yourself as the applicant are likely to be, "Am I good enough?" "Can I pass?" and the like.  Now, however, it is more like, "Where do I find elastic time to magic some space to write that essay?"

Being a firm believer in testing yourself and taking life to the limits in order to learn, I have found a wonderful sense of accomplishment this year.  Simple things have shown me how I learn better as an auditory learner. Which is a shock as a partially deaf student.  Also, being a lover of technology, I thought I would fall in love with my new iPad we were supplied with.  However, it seems this is only one way I find ease in which to record my notes. I still prefer note pads and pieces of paper.

Chemistry is now making sense!

After learning more and more about nutrition I realise how thankful I am for the extended year zero at London Met last year. Without that insight into chemistry I may have found things tricky this year.  As always with life, there are highs and lows and lots to catch up on on my desk, laying around in organised piles.  
This first year at university I have found an affection for the beautiful red brick buildings around campus, for coffee in Starbucks each sleepy morning and the smiling faces who serve my vanilla latte.

I now know I want to do well, be the best I can be.  I have had to learn the lesson of this by lowering my work hours. I wish to continue my studies upon successful completion of this Honours degree.

Here's to the exam period and the second year.


Sunday 17 March 2019

Errors in Meiosis

Errors in meiosis                               Louise Usher                                                            
                                                             000850856-9

Meiosis is a crucial part of creating early life.  As humans, we have 46 chromosomes for all body cells.  Prior to reaching this stage of development,  gametes join to go through various steps of fertilization in order to form a zygote.  The zygote contains 23 pairs of chromosomes.  23 single chromosomes from the sperm and 23 from the oocyte.  Therefore creating the correct number of 46 chromosomes needed.  Thus,  a complete set of chromosomes from each parent is now stored as the cell goes into the next stage of development.

Errors in meiosis can be the result of several outcomes.  Genetic changes can cause diseases in these cases. 

As females have produced all their egg cells prior to birth, the age of the mother will also indicate the age of the eggs.  Womens eggs may take up to 45 years to reach complete meiosis whereas sperm is being produced all the time.  A baby will have a higher risk of genetic chromosomal abnormalities if the mother is older. 
Should an error occur in oocyte or sperm,  the resulting baby will have this error in every cell of their body.  Ref: geneticseducation.nhs.uk [accessed March 11th 2016]

New alterations in the DNA sequence is likely to relate more to the fathers age. Ref: Voet, Voet and Pratt, Fundementals of Biochemistry, Wiley.



A genetic disorder is a problem caused by abnormalities in the genome.  Some genetic disorders can be inheritated from the parents.  Non heritable disorders of the genes can create defects in eukariotic cells caused by new mutations or changes to DNA while meiosis takes place. 

Genetics is central to biology. Underlying all life processes is gene activity. DNA is made up of two chains.  Each chain consists of building blocks nucleotides.  Within the nucleotides is deoxyribase, a phosphate group and a base.  The four bases are adenine, guanine, cytosine and thyamine.  In RNA, uracil occurs in place of thiamine.
The sequence of these bases within a strand determines the genetic information stored within that strand. Ref: Peter J Russell.  iGenetics 2nd edition.  Pearson.

While a change in the sequence of the gene may have no effect (known as polymorphism) there is also a chance of a severe disruption of the function of certain genes. Ref: geneticseducation.nhs.uk [accessed March 11th 2016]
Should gene function be disrupted in this way, diseases can result  These are known as mutations.
You can see below in figure 1 the differences in functional and non functional protein.






Errors in meiosis                               Louise Usher                                                            
                                                             000850856-9




Fig 1 – functional and non functional protein

Variations in a DNA sequence depends on a number of factors
·      The size of the variant
·      The pathogenicity of the variant

Single nucleotide polymorphisms (SNP’s) are common.  This is just one type of a variant.  Rare genetic conditions can be created but mutations are specific to only an individual family. Ref: Peter J Russell.  iGenetics 2nd edition.  Pearson.



Depending on how the error occurs determines if it is
·      Non – disjunction
·      Segregation errors
·      Translocation errors
·      Recombination errors

Segregation errors have eggs or sperm which create too many or too few chromosomes.  Fertilised eggs may have an extra chromosome of a particular pair (trisomy). Monosomy is one chromosome fewer in each cell.  Turner syndrome and Klinefelter syndrome can result from this.

Translocation errors have no crossover occurring.  Often resulting in cancers forming.  Burkitt lymphoma affects chromosomes 8 and 14.  Chronic myelogenous leukemia affects chromosomes 9 and 22. 

Recombination errors involves the swapping of genetic materials between both chromosomes of the same pair (homologous).  Side by side, they pair up, break, swap DNA and rejoin.  If the chromosomes realign and are misaligned, duplications can occur.  Extra genetic material or deletions are likely to occur which involves missing genetic material. 
In non-homologous pairs, the exchange gives chromosome translocations.
Errors in meiosis                               Louise Usher                                                            
                                                             000850856-9


Reciprical translocation involves the swapping of material.
Chromosomes can also stick together end to end which is known as Robertsonian translocation.
Translocations can lead to extra copies of genes causing over expression resulting in disrupted cell function.  Therefore, the loss of generic material may lead to the cell missing copies of genes essential to this activity.

Congenital diseases occur when there are errors in Meiosis.  While the list is endless and growing all the time (some illnesses still are awaiting scientific evidence to confirm if they are due to meiosis errors or not) many diseases are born from such errors.

Muscular dystrophy is characterized by insufficient protein ‘dystrophin’ as you can see below in figure 2.

Figure 2 – chromosomes for muscular dystrophy ref: www.geneticsformedics.com

Severe combined immunodeficiency (SCID) is a heritable disorder where individuals have no functional immune system.  Minor infections can cause death in such individuals at a very young age.  The FDA approved the first human gene therapy trial in 1990 on a girl called Ashanti DeSliva.   She has an autosomal form of SCID originating from mutation of the gene encoding adenosine deaminase (ADA) which is an enzyme.  Some white blood cells (T cells)  were isolated and mixed with a
Errors in meiosis                               Louise Usher                                                            
                                                             000850856-9


retroviral vector carrying an inserted copy of ADA.  As the virus infected many of the cells, a copy of the ADA gene was inserted into the genome of some of the T cells.
Many treatments of injection of these genetically altered T cells into Ashantis bloodstream and she also periodically accepted injections of purified ADA protein. 
More recently SCID treatment has involved bone marrow stem cells being used (see fig 3 below) with in vitro repopulation of the number of ADA producing cells.  This gene therapy has been somewhat successful in restoring health of a small number of children to date yet this is still considered the most successful example of gene therapy. Ref: King, Cummings, Spencer, Palladino Concepts of Genetics Eleventh edition Pearson global [776-777]
CREATOR: gd-jpeg v1.0 (using IJG JPEG v62), quality = 90
Fig 3. Bone marrow stem cell treatment in SCID  ref: thriving.childrenshospital.org

There are many more similar autoimmune illnesses such as crohns disease being researched to confirm or deny if a chromosomal mutation is responsible for the illness.
Crohns disease is related to chromosomes 5 and 10.  Should an individual have variations to the ATG16LI, IRGM and NOD2 increase the risk of developing crohns disease. Also, the IL23R gene is associated with Crohns disease. However, there is also an element that genetic and environmental factors play a role in this disorder developing yet many of the causes still remain unknown. Ref: Peter J Russell.  iGenetics 2nd edition.  Pearson.



Many diseases result from chromosomal errors during meiosis. Huntingdons, muscular dystrophy, down syndrome, Turners syndrome, Cri-du-chat syndrome, Burkitt lymphoma,  Klinefelter syndrome and Cystic fibrosis are examples.

Cystic fibrosis has just 3 missing letters on chromosome 7.  This change effects the body’s epithelial cells that compromise the linings of the lungs, pancreas, liver, sweat

Errors in meiosis                               Louise Usher                                                            
                                                             000850856-9

glands, digestive tract and reproductive system.  Usually, the epithelial cells release

slippery mucus to act as a lubricant, trapping dust and bacteria.  However,  cystic fibrosis makes epithelial cells produce a protein.  This leads to thick sticky mucus which can block the bronchial tubes.  Symptoms caused are coughing, tiredness, fatigue and worse,  often leading to the need for organ transplants.  The digestive tract is also affected causing lack of nutrient absorbtion and bulky stools. Ref: Peter J Russell.  iGenetics 2nd edition.  Pearson.




Tay-sachs disease has just one abnormal chromosomal letter. Fatty materials in the brain should be dissolved under normal conditions.  However, with this error, the proteins do not work.  Fat builds up, crushing critical brain cells.  Infants with this disease appear to develop normally for the first few months of life.  As nerve cells become deposited with fatty particles the child becomes blind, deaf and unable to swallow.  Muscles also become atrophic. Ref: Steve Parker, The concise human body book, Dorling Kindersley




It is usual for the miracle of meiosis to happen without errors.  However,  so many individuals suffer with diseases caused by such errors.  While this causes sadness to all concerned and suffering, at what stage should medical intervention stop?
In vitro fertilization (IVF) has shown us that there is now technology to diagnose chromosomal abnormalities and therefore decide which humans are allowed to go on and develop as babies. 

Ethics dictate that this type of diagnosis should perhaps not prevent scientists from allowing these illnesses to be present in humans but rather develop ways to manage the illnesses. 














Bibliography


Peter.J.Russell iGenetics A molecular approach. Second Edition. Benjamin Cummings

Cystic Fibrosis, Sams Story
Bozeman Science “Mutations”
Arman Azad “Causes – Crohns Disease”
Renan Mauch “Cystic Fibrosis Pulmonary disease”
Shomus Biology “Chromosomal Disorders”
AK lectures “Chromosomal Deletion, inversion, duplication and translocation” “Aneuploidy and non disjunction”
Kristen Kopronski “Trisomy 21”

Steve Parker The Concise Human Body Book. Dorling Kindersley

Voet, Voet and Pratt Fundamentals of Biochemistry upgrade edition – Wiley


Klug, Cummings, Spencer, Palladino Concepts of genetics eleventh edition Pearson

Thursday 14 March 2019

Year 2 a long and winding road

Frustration overwhelms me at times.  Still wanting to do well, I would be inclined to describe that I have lost my MOJO. 

Two days ago, my mother in law died.  My father in law is on pallitative care.  Mum still resides with us, needing full time care after her heart attack and macro degeneration in her eyes.  They have found issues within the brain which suggests vascular dementia.  

Personal problems all around I continue to attempt to be all things to all people, while my children begin a life long relationship yoyo in life as they reach 'that age'. 

So where does this leave me and my study.  That's a yoyo too. I have asked some tutors for help.  Two have been helpful, several others not only unhelpful but downright rude.   Not wishing to quit, yet having to on bad days (the tears flow and the anxiety kicks in) one is left wondering if this degree is worth it all.   If I could turn back time I would not have begun.  Which leaves me sad.

Physical health has struggled. Mental health has been more awful than it ever was.  I'm half learning some subjects.  Hardly learning others.   As the class segregates itself from those who feel they are better than others, I can't help but wonder why not everyone realises how short life is and that the experience of life is meant to be JOY.

While I continue to try and pass this year,  still I feel I would like to gain my degree.  I'm not sure about going the whole way to my PhD anymore.  Not without the support I expected.  Perhaps I expected too much.  
Certain days it seems impossible that I can even attend let alone do well.  Personal life has got in the way.   Yet I have come so far.  To quit now would be a crime.  So I shall continue to struggle and continue to try. 


Tuesday 5 March 2019

How far we have come

March already.  Where is this first year going at university? My good intentions were to add to this blog each week.  Recording my life lessons as well as my science lessons.  Likely the biggest lesson I learnt was that life gets in the way, even with the best intentions.



When you first begin to fill out that UCAS form,  the type of questions you ask as the applicant are likely to be, “Am I good enough?” “Can I pass?” and the like.  Now, however, it is more like, “Where do I find elastic time to magic some space to write that essay?”

Being a firm believer in testing yourself and taking life to the limits in order to learn, I have found a wonderful sense of accomplishment this year.  Simple things have shown me how I learn better as an auditory learner.  Which is a shock as a partially deaf student.  Also, being a lover of technology,  I thought I would fall in love with my new iPad we were supplied with.  However, it seems that this is only one way I find ease in which to record my notes. I still prefer note pads and pieces of paper.

Chemistry is now making sense!

After learning more and more about nutrition is showing me how thankful I can be for the extended year zero at London met last year.  I think without that insight into Chemistry I may have found things tricky this year.  As always with life, there are highs and lows and lots still to catch up on laying on my desk.  This first year at university I have found an affection for the beautiful buildings around campus, for the coffee in starbucks and the smiling faces who serve it.  I now know I want to do well,  have had to lessen the burden of this by lowering my work hours, and wish to continue my studies upon successful completion of this Honours degree.

Here’s to the exam period and the second year.

Saturday 2 March 2019

Things are looking up (even if just for today)

As you may have seen on my last blog post here, I am struggling.

There have been a few moments of epiphany. One was the dream i had where a nurse saw me in my lab coat and called me "Dr".  Right after a wonderful conversation with Sharon, a new friend who is studying a Phd in nutrition.  She said she is happy for me to spend some time in the lab with her.  I still want to see what this phd stuff is all about!

We had a great day at uni on Thursday and I understood EVERYTHING! This is the first time I have felt like this in absolute ages.  I am getting to the point of knowing who I can turn to and who I absolutely shouldn't at uni.

Still been struggling with the lady who is more political than me and sent me insults recently.  Yet I have decided to not be too involved with her and instead I just am polite and pass the time of day.

The past 3 weeks I have not been in to the Biochemistry lectures.  I just can't face it.  IT's all too hard.  I did consider sitting at the back of the room just to sign the register and spend some time reading through the lecture notes of the weeks I have missed.

Biochemistry is my toughest subject. Last year it was chemistry but I 'get' that this year.  And I'm even starting to love it.  The way that we have learnt it comes into food composition and makes the food what it is has been fascinating.

Finding out out that we only have 5 more teaching weeks of uni was really the deal breaker for me.  5 weeks of struggle or a lifetime of regretting giving up on university. I would far rather struggle through for 5 weeks.

Speaking to my osteopath (more on that shortly) who was also a mature student with other commitments, I realised that she totally validated how I am feeling. She also made me realise that what I am doing (taking each deadline ahead and dealing with that one) is exactly what I need to be doing.  To try and plan too much in advance seems too tricky.  And so this is how I am going to work things.  One deadline at a time.  Feels like I want to type "sweet jesus" in there after the 1980's song "One day at a time" but I guess that would make me seem
1. slightly crazy
2. quite old

I want to write so many blog posts on here that I think I will be around for quite some time in the next few days.  It's great revision and it will show you guys some more technical stuff too!

This weekend has made me feel brighter.  As I write this on a Saturday morning (and I'm publishing this way off in the future) I can let you into a secret! The lovely Scott and I have decided to give things another go after several years apart.  He really is my rock and I couldn't be happier to have him in my life.  This morning he has to go for an Echocardiogram as he has problems with his heart.  WE are both worried obviously.  They feel he has an enlarged heart muscle.  His BP is high and his heart rate is floating around 95-110 constantly.  We already know there is a leaky valve there which is likely to have caused these issues.  So after we have gone through that we are off to London O2 arena to see the X Factor tour! We go every year and I'm so excited about that!  
Sunday is mothers day.  Yesterday, driving through the sunshine I felt happier than I have in a very long time.  I remembered to be grateful that I have my mum who is being just delightful right now (she needs me to help with the Dad stuff) and also I am very very lucky to be a mum.  After years of endometriosis and infertility I have 2 wonderful IVF twins who are my world.  So mothers day promises to be a day of eating well and loveliness.

So nice to be able to write more positively. Although as promised, I must post here about the Osteopath news!

Meanwhile,  sending best wishes