Showing posts with label science. Show all posts
Showing posts with label science. Show all posts

Monday, 20 September 2021

Feeling little and lost

Today I work at university as a student ambassador. Watching the new students making friends, getting lost, looking at maps and wondering what they might have set themselves up for.

Hoping to be helpful, I smile. And help them.

During lunch I read about writing. My course starts in a couple of days and I am/was so excited. This feels so right. I'm excited. I said that already. Yet I am also seeing how I have so much to learn.

Imposter syndrome is lurking a little - yet I want to do this so the only way is to DO THIS. I'm nervous. Worried I don't know enough. I need to learn! And FAST.



Something crazy is going on with me. I am considering the PHD. Yup. I said it out loud.

Potentially, I think I may have found a supervisor. She seems awesome and signs off posts with things like, "With love" etc. She shares her teachings on Patreon so I have signed up to be a supporter of her and hope that I can go ahead and learn from her and possibly have her as a supervisor on my phd...

Much as I love and adore my science academics, I just literally sweated profusely. All these potential new students, and I asked if I could just address them about the student ambassador scheme. JIKES. Being the first person to speak to them in class was a massive responsibility. The academics said yes but let everyone arrive first.

So here I was in a room full of 200 new students, plus 15 academics in science and I was saying, "Good morning and welcome, come be an ambassador and earn some money..." among other things.

Yes, I love public speaking but this was so off the cuff. It showed. My confidence is beginning to wobble ever so slightly.

Saturday, 15 May 2021

Post-exam feeling.

Waking up post exams is a nice feeling!
Did I do enough? Lots of big words were involved so I’m hoping so.

At the end of the day my aim was to not quit. I’ve not quit.
A 1st class honours or 2:1 would be a bonus. But I’ve not quit.
The thing about this groovy degree is there are always paramedics around and I video chatted with one last night checking mums legs. They were freezing cold and quite white. Capillary refill is my latest skill I’ve learnt :)
Mum isn’t great but ok. We are seeing the optician today which will be useful. My paramedic friend did say sometimes there are things they just can’t treat and it’s a case of care and comfort (I said that bit in my own words).
So, quick cheeky ten min coffee and I’m hairdressing…




Friday, 12 March 2021

The Snow

12 inches of snow fell overnight.

I was leaving the London campus after choir and the songs echoed in my head as I made a new friend who is one cracking solo soprano and i was taking her home due to the weather. It was forecast but we left London with zero snow, drove into it about 20 minutes from home and it got thicker and thicker.  The following morning, a foot of snow...

Stuck.  How was I going to get my essay written?  I wasn't sure.
My son decided to walk to his girlfriends house which meant I could use his desk to sit and write my essay on Iron and Colorectal Cancer.   3 days and nights i sat there. This was a tough essay and the flow simply wasn't there.  I didn't change clothes, or shower. I just worked until it was done with some sleep in between.

Finally I submitted it and realised I might be able to concentrate on learning Mozart for the choir concert.  Until a 'chasing' email popped into my inbox as my dissertation supervisor was 'worried about me'

I would get it done, this I knew.  But right at the ping of the inbox, I wanted to cry.

Friday, 1 May 2020

#examgate

Group chat:

Woah that was amazing guys

Yeah thank god. It's over and it was good.

What? Are you guys kidding right?

Anna and I were taking our exams in another room.  The other 4 of our group were in the main exam hall.
All in the hall were told to cross out the last 10 questions and were given another piece of paper which was totally nothing we had revised.

Anna and I were just given the usual paper.  Cutting a very long story short, the head of science was rude, defensive and not at all apologetic for this mistake.  Sadly for Anna and I (but fairly) all questions were erased.

The entire thing has all been a nightmare.  I'm getting sick of all this.

Sunday, 2 June 2019

Biology results are in!!!

Yesterday,  a little notification popped up in our nutrition student Facebook group.

"Biology is up."

I was out with the children at the time and took a deep breath.  The internet was intermittent where we were and it was definitely not a time to make things all about me.  I whispered to my son, "I'm about to get an exam result."

Not realising that this was actually also a mark for the entire module.

So, carefully I logged in. It all felt so alien to me after just a short spell of time not logging in.  Those people who log in throughout every day to get results.  Bit more committed than me maybe?

As I clicked here and there I realised things were looking GOOD.  Relieved, excited and a little proud of myself I noticed that I had 67% for my exam! Chuffed to bits.  Had there not been that silly 30% essay mark in this module I am pretty sure I would have got a first.  However, scraping a 2:1 with an overall of 60% impressed myself.  Not going to complain about that at all.

Chuffed.
Chuffed.
Chuffed.

Meanwhile, we await the rest!

Good luck with yours.  Any results in yet?  What did you get?


Sunday, 17 March 2019

Errors in Meiosis

Errors in meiosis                               Louise Usher                                                            
                                                             000850856-9

Meiosis is a crucial part of creating early life.  As humans, we have 46 chromosomes for all body cells.  Prior to reaching this stage of development,  gametes join to go through various steps of fertilization in order to form a zygote.  The zygote contains 23 pairs of chromosomes.  23 single chromosomes from the sperm and 23 from the oocyte.  Therefore creating the correct number of 46 chromosomes needed.  Thus,  a complete set of chromosomes from each parent is now stored as the cell goes into the next stage of development.

Errors in meiosis can be the result of several outcomes.  Genetic changes can cause diseases in these cases. 

As females have produced all their egg cells prior to birth, the age of the mother will also indicate the age of the eggs.  Womens eggs may take up to 45 years to reach complete meiosis whereas sperm is being produced all the time.  A baby will have a higher risk of genetic chromosomal abnormalities if the mother is older. 
Should an error occur in oocyte or sperm,  the resulting baby will have this error in every cell of their body.  Ref: geneticseducation.nhs.uk [accessed March 11th 2016]

New alterations in the DNA sequence is likely to relate more to the fathers age. Ref: Voet, Voet and Pratt, Fundementals of Biochemistry, Wiley.



A genetic disorder is a problem caused by abnormalities in the genome.  Some genetic disorders can be inheritated from the parents.  Non heritable disorders of the genes can create defects in eukariotic cells caused by new mutations or changes to DNA while meiosis takes place. 

Genetics is central to biology. Underlying all life processes is gene activity. DNA is made up of two chains.  Each chain consists of building blocks nucleotides.  Within the nucleotides is deoxyribase, a phosphate group and a base.  The four bases are adenine, guanine, cytosine and thyamine.  In RNA, uracil occurs in place of thiamine.
The sequence of these bases within a strand determines the genetic information stored within that strand. Ref: Peter J Russell.  iGenetics 2nd edition.  Pearson.

While a change in the sequence of the gene may have no effect (known as polymorphism) there is also a chance of a severe disruption of the function of certain genes. Ref: geneticseducation.nhs.uk [accessed March 11th 2016]
Should gene function be disrupted in this way, diseases can result  These are known as mutations.
You can see below in figure 1 the differences in functional and non functional protein.






Errors in meiosis                               Louise Usher                                                            
                                                             000850856-9




Fig 1 – functional and non functional protein

Variations in a DNA sequence depends on a number of factors
·      The size of the variant
·      The pathogenicity of the variant

Single nucleotide polymorphisms (SNP’s) are common.  This is just one type of a variant.  Rare genetic conditions can be created but mutations are specific to only an individual family. Ref: Peter J Russell.  iGenetics 2nd edition.  Pearson.



Depending on how the error occurs determines if it is
·      Non – disjunction
·      Segregation errors
·      Translocation errors
·      Recombination errors

Segregation errors have eggs or sperm which create too many or too few chromosomes.  Fertilised eggs may have an extra chromosome of a particular pair (trisomy). Monosomy is one chromosome fewer in each cell.  Turner syndrome and Klinefelter syndrome can result from this.

Translocation errors have no crossover occurring.  Often resulting in cancers forming.  Burkitt lymphoma affects chromosomes 8 and 14.  Chronic myelogenous leukemia affects chromosomes 9 and 22. 

Recombination errors involves the swapping of genetic materials between both chromosomes of the same pair (homologous).  Side by side, they pair up, break, swap DNA and rejoin.  If the chromosomes realign and are misaligned, duplications can occur.  Extra genetic material or deletions are likely to occur which involves missing genetic material. 
In non-homologous pairs, the exchange gives chromosome translocations.
Errors in meiosis                               Louise Usher                                                            
                                                             000850856-9


Reciprical translocation involves the swapping of material.
Chromosomes can also stick together end to end which is known as Robertsonian translocation.
Translocations can lead to extra copies of genes causing over expression resulting in disrupted cell function.  Therefore, the loss of generic material may lead to the cell missing copies of genes essential to this activity.

Congenital diseases occur when there are errors in Meiosis.  While the list is endless and growing all the time (some illnesses still are awaiting scientific evidence to confirm if they are due to meiosis errors or not) many diseases are born from such errors.

Muscular dystrophy is characterized by insufficient protein ‘dystrophin’ as you can see below in figure 2.

Figure 2 – chromosomes for muscular dystrophy ref: www.geneticsformedics.com

Severe combined immunodeficiency (SCID) is a heritable disorder where individuals have no functional immune system.  Minor infections can cause death in such individuals at a very young age.  The FDA approved the first human gene therapy trial in 1990 on a girl called Ashanti DeSliva.   She has an autosomal form of SCID originating from mutation of the gene encoding adenosine deaminase (ADA) which is an enzyme.  Some white blood cells (T cells)  were isolated and mixed with a
Errors in meiosis                               Louise Usher                                                            
                                                             000850856-9


retroviral vector carrying an inserted copy of ADA.  As the virus infected many of the cells, a copy of the ADA gene was inserted into the genome of some of the T cells.
Many treatments of injection of these genetically altered T cells into Ashantis bloodstream and she also periodically accepted injections of purified ADA protein. 
More recently SCID treatment has involved bone marrow stem cells being used (see fig 3 below) with in vitro repopulation of the number of ADA producing cells.  This gene therapy has been somewhat successful in restoring health of a small number of children to date yet this is still considered the most successful example of gene therapy. Ref: King, Cummings, Spencer, Palladino Concepts of Genetics Eleventh edition Pearson global [776-777]
CREATOR: gd-jpeg v1.0 (using IJG JPEG v62), quality = 90
Fig 3. Bone marrow stem cell treatment in SCID  ref: thriving.childrenshospital.org

There are many more similar autoimmune illnesses such as crohns disease being researched to confirm or deny if a chromosomal mutation is responsible for the illness.
Crohns disease is related to chromosomes 5 and 10.  Should an individual have variations to the ATG16LI, IRGM and NOD2 increase the risk of developing crohns disease. Also, the IL23R gene is associated with Crohns disease. However, there is also an element that genetic and environmental factors play a role in this disorder developing yet many of the causes still remain unknown. Ref: Peter J Russell.  iGenetics 2nd edition.  Pearson.



Many diseases result from chromosomal errors during meiosis. Huntingdons, muscular dystrophy, down syndrome, Turners syndrome, Cri-du-chat syndrome, Burkitt lymphoma,  Klinefelter syndrome and Cystic fibrosis are examples.

Cystic fibrosis has just 3 missing letters on chromosome 7.  This change effects the body’s epithelial cells that compromise the linings of the lungs, pancreas, liver, sweat

Errors in meiosis                               Louise Usher                                                            
                                                             000850856-9

glands, digestive tract and reproductive system.  Usually, the epithelial cells release

slippery mucus to act as a lubricant, trapping dust and bacteria.  However,  cystic fibrosis makes epithelial cells produce a protein.  This leads to thick sticky mucus which can block the bronchial tubes.  Symptoms caused are coughing, tiredness, fatigue and worse,  often leading to the need for organ transplants.  The digestive tract is also affected causing lack of nutrient absorbtion and bulky stools. Ref: Peter J Russell.  iGenetics 2nd edition.  Pearson.




Tay-sachs disease has just one abnormal chromosomal letter. Fatty materials in the brain should be dissolved under normal conditions.  However, with this error, the proteins do not work.  Fat builds up, crushing critical brain cells.  Infants with this disease appear to develop normally for the first few months of life.  As nerve cells become deposited with fatty particles the child becomes blind, deaf and unable to swallow.  Muscles also become atrophic. Ref: Steve Parker, The concise human body book, Dorling Kindersley




It is usual for the miracle of meiosis to happen without errors.  However,  so many individuals suffer with diseases caused by such errors.  While this causes sadness to all concerned and suffering, at what stage should medical intervention stop?
In vitro fertilization (IVF) has shown us that there is now technology to diagnose chromosomal abnormalities and therefore decide which humans are allowed to go on and develop as babies. 

Ethics dictate that this type of diagnosis should perhaps not prevent scientists from allowing these illnesses to be present in humans but rather develop ways to manage the illnesses. 














Bibliography


Peter.J.Russell iGenetics A molecular approach. Second Edition. Benjamin Cummings

Cystic Fibrosis, Sams Story
Bozeman Science “Mutations”
Arman Azad “Causes – Crohns Disease”
Renan Mauch “Cystic Fibrosis Pulmonary disease”
Shomus Biology “Chromosomal Disorders”
AK lectures “Chromosomal Deletion, inversion, duplication and translocation” “Aneuploidy and non disjunction”
Kristen Kopronski “Trisomy 21”

Steve Parker The Concise Human Body Book. Dorling Kindersley

Voet, Voet and Pratt Fundamentals of Biochemistry upgrade edition – Wiley


Klug, Cummings, Spencer, Palladino Concepts of genetics eleventh edition Pearson

Saturday, 2 March 2019

Things are looking up (even if just for today)

As you may have seen on my last blog post here, I am struggling.

There have been a few moments of epiphany. One was the dream i had where a nurse saw me in my lab coat and called me "Dr".  Right after a wonderful conversation with Sharon, a new friend who is studying a Phd in nutrition.  She said she is happy for me to spend some time in the lab with her.  I still want to see what this phd stuff is all about!

We had a great day at uni on Thursday and I understood EVERYTHING! This is the first time I have felt like this in absolute ages.  I am getting to the point of knowing who I can turn to and who I absolutely shouldn't at uni.

Still been struggling with the lady who is more political than me and sent me insults recently.  Yet I have decided to not be too involved with her and instead I just am polite and pass the time of day.

The past 3 weeks I have not been in to the Biochemistry lectures.  I just can't face it.  IT's all too hard.  I did consider sitting at the back of the room just to sign the register and spend some time reading through the lecture notes of the weeks I have missed.

Biochemistry is my toughest subject. Last year it was chemistry but I 'get' that this year.  And I'm even starting to love it.  The way that we have learnt it comes into food composition and makes the food what it is has been fascinating.

Finding out out that we only have 5 more teaching weeks of uni was really the deal breaker for me.  5 weeks of struggle or a lifetime of regretting giving up on university. I would far rather struggle through for 5 weeks.

Speaking to my osteopath (more on that shortly) who was also a mature student with other commitments, I realised that she totally validated how I am feeling. She also made me realise that what I am doing (taking each deadline ahead and dealing with that one) is exactly what I need to be doing.  To try and plan too much in advance seems too tricky.  And so this is how I am going to work things.  One deadline at a time.  Feels like I want to type "sweet jesus" in there after the 1980's song "One day at a time" but I guess that would make me seem
1. slightly crazy
2. quite old

I want to write so many blog posts on here that I think I will be around for quite some time in the next few days.  It's great revision and it will show you guys some more technical stuff too!

This weekend has made me feel brighter.  As I write this on a Saturday morning (and I'm publishing this way off in the future) I can let you into a secret! The lovely Scott and I have decided to give things another go after several years apart.  He really is my rock and I couldn't be happier to have him in my life.  This morning he has to go for an Echocardiogram as he has problems with his heart.  WE are both worried obviously.  They feel he has an enlarged heart muscle.  His BP is high and his heart rate is floating around 95-110 constantly.  We already know there is a leaky valve there which is likely to have caused these issues.  So after we have gone through that we are off to London O2 arena to see the X Factor tour! We go every year and I'm so excited about that!  
Sunday is mothers day.  Yesterday, driving through the sunshine I felt happier than I have in a very long time.  I remembered to be grateful that I have my mum who is being just delightful right now (she needs me to help with the Dad stuff) and also I am very very lucky to be a mum.  After years of endometriosis and infertility I have 2 wonderful IVF twins who are my world.  So mothers day promises to be a day of eating well and loveliness.

So nice to be able to write more positively. Although as promised, I must post here about the Osteopath news!

Meanwhile,  sending best wishes

Tuesday, 9 January 2018

End of year 1

March already.  Where is the first year going at university? 
 
My good intentions were to add to this blog each week.  Recording my life lessons as well as my science lessons.  Likely the biggest lesson I learnt was that life gets in the way, even with the best intentions.
 
When you first begin to fill out that UCAS form, the type of questions you ask yourself as the applicant are likely to be, "Am I good enough?" "Can I pass?" and the like.  Now, however, it is more like, "Where do I find elastic time to magic some space to write that essay?"
 
Being a firm believer in testing yourself and taking life to the limits in order to learn, I have found a wonderful sense of accomplishment this year.  Simple things have shown me how I learn better as an auditory learner. Which is a shock as a partially deaf student.  Also, being a lover of technology, I thought I would fall in love with my new iPad we were supplied with.  However, it seems this is only one way I find ease in which to record my notes. I still prefer note pads and pieces of paper.
 
Chemistry is now making sense!
 
After learning more and more about nutrition I realise how thankful I am for the extended year zero at London Met last year. Without that insight into chemistry I may have found things tricky this year.  As always with life, there are highs and lows and lots to catch up on on my desk, laying around in organised piles.  
This first year at university I have found an affection for the beautiful red brick buildings around campus, for coffee in Starbucks each sleepy morning and the smiling faces who serve my vanilla latte. 
 
I now know I want to do well, be the best I can be.  I have had to learn the lesson of this by lowering my work hours. I wish to continue my studies upon successful completion of this Honours degree.
 
Here's to the exam period and the second year.

Monday, 25 September 2017

First day excitement

5am and I'm awake.

Not nerves or excitement but that's just me, being awake early.
Having been on Amitriptyline for nerve pain due to my slipped discs (the tablets didn't work by the way) I found I was having trouble waking in the mornings. Yet since I stopped I wake and I'm like BOOM! Wide awake.  So I'm here, writing a blog to you guys when I can still see the moon in the sky.



Like most of us, I kind of always struggle to prioritise.  Like, I love writing here and on my other blogs yet I also need to edit some videos, get a look at what the day has in store, maybe eat something and possibly do a little house work/walk the dog?

This is definitely something I need to get over.  I do achieve a lot yet for me, I always want more and must work harder on living in the NOW.  It's important, I know that as well as anyone.  However, just for today I will focus on getting myself to university and looking as good as I think I can look, sort everything I need to take and generally go with the flow.

Staying after class, I will be taking my laptop in to get some work done.  When I appear at home I do house work and get called Mum.  I love my home life but if I want to achieve more, there is no question but to crack on and do it.

I'm excited.

The course content looks amazing for this year.
Epidemeology
Immunology
Cells and systems
Research skills

I have yet to find a love within research but if I want to be Dr Usher I will need to.  Damn that looks good in text.  Dr Usher.


So for research we have an amazing tutor who is funny, energetic and passionate about his work. I have a good feeling things could not be better.

In a blog post very soon I will be writing about my possible studies in the future, looking at PhD and Masters degrees.

Meanwhile, I will post back here later for you guys and let you know how things went!

Wish me luck!

Saturday, 15 October 2016

Lab days with chemistry

Learning, learning.  What even is or was this?

Not sure.

Looks to me like serial dilutions.  I love the lab.  Yet seems I'm one of the few.
Why I adore practical 'stuff' I'm not sure.  
Today we got a locker with all these bits and bobs in, mostly made of glass.  Less chance of cross contamination than plastic. 

Learning to pipette is not an easy task.  Although I am crazy precise.  Thinking this might well come from my chef training.  Ingredients of a different kind.

We do have a chuckle in the lab. 
My deafness is at an all time high so even with the hearing aid in, I am struggle to hear unless I can watch the lecturers lips.  Thankfully, he has a big ol voice. 

Makes me laugh as he introduces himself with a simple Hi I am....first name.  When you look him up in a non stalker fashion, you find he is Dr so and so with all these letters trailing his name.  What a lovely and down to earth chap! I'm going to enjoy chemistry far more than last year.

I can tell!

Monday, 19 September 2016

Week 1 of university


Rain, rain and a little more rain. 

Gosh did it rain.  
Such a shame as we had the most amazing welcome planned for us with a beautiful marquee set up on the Pembroke lawn.  Awfully posh.  I felt it sounded just a little Royal.   

Excitedly,  I straightened my hair to its finest smoothness just that morning and was happy to hear that my new found friend Jules has also done the same.  Neither of us with an umbrella. 
Both of us taking cover in the marquee.  Bravely.  As no one else was! 
They were shyly braving the rain!  



Bacon rolls for brunch.  Yum.  Slight issue there with my gluten allergy. I ate just a rasher of bacon.  

Becky sat with me who was another human nutrition student. She was struggling to eat too as she was vegetarian.  Chatting with new friends, all seemed to be going well.  There was so much to take in on this new day.  Imagining this must be what it's like to move into the Big Brother house on channel 5 tv. Everyone getting to know each other while at the same time being on our best behaviour.  Missing my friends from my old university in this week was a huge challenge.  I was so glad Kathy was there. She was a friendly and familiar face from the last university.  
Yet I wished my Muna and Sheyma were here.  My comfort blankets.  That was all. I would have to learn to get along without them.   

The staff we met on this first week all seemed so professional, smart and totally passionate about their subjects and their university.  Buildings all around with beautiful red brick,  steeped in history of days gone by when this was a historic dockyard.  The place is just stunning.  Surrounded by trees and other green life giving forces.  Opening my eyes to see such beauty more and more as I learn details of the science behind life.  I think I'm going to like it here.